[[ Category: Data ]]
...ur saved data. Below are some best practices on how to save and store your data in our group.
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Meta(gds) #show extracted meta data
...log=TRUE) #convert to expression set, by default obtains annotation (GPL) data with log2 transformation
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**annotation data for the array (normally illuminaMousev2BeadID.db)
==Loading Data==
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**annotation data for the array (normally either '''lumiMouseIDMapping''' or '''lumiHumanIDMa
==Loading Data==
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* Click on Run on the bottom of the screen. Data will be saved in the folder noted under basic fields
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...gan there are two clusters, one for human data (Armis) and one for non-PHI data (Great Lakes). Both of these are connected to a storage service called [ht
.../precisionhealth.umich.edu/tools-resources/data-access-tools/how-to-access-data-tools-analytic-environments/ these instructions].
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6 KB (991 words) - 20:29, 29 September 2025
...shboard] using the login information for your lab (the Bridges Lab account data is located on the side of the machine.)
*If you need to omit samples from the analysis, do so under the '''Data Review''' tab by clicking on the affected target, highlighting, and omittin
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==Data Processing==
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**annotation data for the array (normally either '''lumiMouseIDMapping''' or '''lumiHumanIDMa
==Loading Data==
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5 KB (722 words) - 15:34, 2 September 2009
#On the popup window select copy and paste the data into an excel document
#On the popup window select copy and paste the data into an excel document
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==Human Subject Data==
If you will be working with Human data you will have to take these classes. They are all offered through MLearnin
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1. First, filter your ITT data to contain only the observations from where animals are in the initial drop
2. You then need to construct a model for your data. It should include 1 covariate for every experimental variable (eg, time, g
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2 KB (323 words) - 13:54, 1 September 2022
**annotation data for the array (normally illuminaMousev2BeadID.db)
==Loading Data==
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5 KB (766 words) - 15:34, 2 September 2009
[[ Category: Data ]]
...ur saved data. Below are some best practices on how to save and store your data in our group.
...
8 KB (1,414 words) - 19:08, 11 August 2024
Meta(gds) #show extracted meta data
...log=TRUE) #convert to expression set, by default obtains annotation (GPL) data with log2 transformation
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2 KB (354 words) - 15:34, 2 September 2009
==Exporting Data==
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...gan there are two clusters, one for human data (Armis) and one for non-PHI data (Great Lakes). Both of these are connected to a storage service called [ht
.../precisionhealth.umich.edu/tools-resources/data-access-tools/how-to-access-data-tools-analytic-environments/ these instructions].
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6 KB (991 words) - 20:29, 29 September 2025
* Prepare a data sheet with one row per animal and space for 3-5 measurements per animal.
* Record the peak grip on your data sheet
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# Check if the primer is available in the lab using the Primer Data sheet at https://docs.google.com/spreadsheets/d/1kQ1G52XuoqpAWHIWT5H2UDz4aD
# Enter both primers in the Primer Data sheet used in Step 1
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...are pre-built UCSC genomes and downloaded from ftp://ftp.cbcb.umd.edu/pub/data/bowtie_indexes/
...enome in both .ebwt and fasta formats (e.g. /ccmb/CoreBA/BioinfCore/Common/DATA/BowtieData/H_Sapiens/hg19)> <reads file to be aligned (e.g. s_1_1_sequence.
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*[[Using Bioconductor To Analyse Beadarray Data]]
*[[Using Bioconductor To Analyse Microarray Data]]
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...or R for the analysis. To get data into R, the easiest way is to make the data in excel then import it into R with this command:
* Using R, providing data is formatted in a dataframe named '''dataset''' with columns '''group''' an
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[[ Category: Data ]]
...esis significance testing, which means that we are generally comparing our data to a null hypothesis, generating an '''effect size''' and a '''p-value'''.
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...he dam and pups for all time points. This is an example to highlight the 3 data points for weight measurements.
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...and resource sharing policy see [http://bridgeslab.sph.umich.edu/posts/lab-data-and-resource-sharing-plan here]:
...ode. Use the existing directory structure to understand where to put your data.
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7 KB (1,268 words) - 19:16, 5 February 2020
#If there is pre-existing data in the database enter '''python manage.py migrate --fake''' to run a fake m
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