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• Using Bioconductor To Analyse Microarray Data
  Meta(gds) #show extracted meta data ...log=TRUE) #convert to expression set, by default obtains annotation (GPL) data with log2 transformation
  2 KB (354 words) - 15:34, 2 September 2009
• Using Bioconductor To Analyse Beadarray Data
  **annotation data for the array (normally illuminaMousev2BeadID.db) ==Loading Data==
  5 KB (766 words) - 15:34, 2 September 2009
• Using Bioconductor To Analyse Beadarray Data (lumi)
  **annotation data for the array (normally either '''lumiMouseIDMapping''' or '''lumiHumanIDMa ==Loading Data==
  5 KB (722 words) - 15:34, 2 September 2009
• Generation of Heatmaps from Microarray Data (KEGG2heatmap or GO2heatmap)
  3 KB (406 words) - 15:35, 2 September 2009
• Data Management
  [[ Category: Data ]] ...ur saved data. Below are some best practices on how to save and store your data in our group.
  8 KB (1,414 words) - 19:08, 11 August 2024
• Using GSEA for Gene Set Analyses of Transcriptional Data
  * Click on Run on the bottom of the screen. Data will be saved in the folder noted under basic fields
  3 KB (434 words) - 13:31, 5 September 2018
• Analysing Data on Armis or Great Lakes using Rmd Files
  ...gan there are two clusters, one for human data (Armis) and one for non-PHI data (Great Lakes). Both of these are connected to a storage service called [ht .../precisionhealth.umich.edu/tools-resources/data-access-tools/how-to-access-data-tools-analytic-environments/ these instructions].
  6 KB (988 words) - 18:32, 5 September 2023

Page text matches

• Main Page
  *[[Using Bioconductor To Analyse Beadarray Data]] *[[Using Bioconductor To Analyse Microarray Data]]
  4 KB (484 words) - 12:10, 15 August 2016
• Surface Plasmon Resonance - Protein Lipid Interactions
  #Analyse the data using [[Using Scrubber2 | Scrubber2]] and/or a separate analysis graphing p
  5 KB (753 words) - 14:40, 14 April 2011
• QPCR - Lin Lab
  ...ortcut to results”icon to open that window. Drag and drop the .sds (raw data) and .csv (Excel spreadsheet) files into the USB window. Right click on th
  3 KB (562 words) - 12:13, 28 May 2009
• Insulin Tolerance Test
  ...epared above to rescue the mice and prevent hypoglycmic shock. Ignore the data from this mouse from that point on. *Analyze data by both % change from fasting glucose and absolute values. Our preferred o
  4 KB (725 words) - 16:43, 10 February 2025
• Culturing RAW 264.7 Cells
  taken from [[http://www.signaling-gateway.org/data/cgi-bin/ProtocolFile.cgi/afcs_PP00000159.pdf?pid=PP00000159 Passage Procedu
  6 KB (860 words) - 15:28, 15 July 2009
• Using Bioconductor To Analyse Microarray Data
  Meta(gds) #show extracted meta data ...log=TRUE) #convert to expression set, by default obtains annotation (GPL) data with log2 transformation
  2 KB (354 words) - 15:34, 2 September 2009
• Using Bioconductor To Analyse Beadarray Data
  **annotation data for the array (normally illuminaMousev2BeadID.db) ==Loading Data==
  5 KB (766 words) - 15:34, 2 September 2009
• Using Bioconductor To Analyse Beadarray Data (lumi)
  **annotation data for the array (normally either '''lumiMouseIDMapping''' or '''lumiHumanIDMa ==Loading Data==
  5 KB (722 words) - 15:34, 2 September 2009
• HPLC - Designing a Method for a Sample or Series
  *Under Data Channels change sample rate if required (10pts/s is usually OK). Click '''
  3 KB (484 words) - 19:22, 14 May 2010
• HPLC - Running a Sample or Series
  *Data will be collected, saved and processed automatically.
  3 KB (455 words) - 18:38, 14 May 2010
• Quantification of Vacuolar Colocalization
  #On the popup window select copy and paste the data into an excel document #On the popup window select copy and paste the data into an excel document
  752 bytes (136 words) - 13:42, 11 June 2010
• Using South To Migrate a Django Database
  #If there is pre-existing data in the database enter '''python manage.py migrate --fake''' to run a fake m
  628 bytes (86 words) - 19:39, 21 July 2010
• Affinity Purification of Proteins - FPLC
  #Go to setup and choose where to save your data.
  3 KB (559 words) - 19:47, 9 February 2011
• RNA-seq Pipeline for Known Transcripts
  ...are pre-built UCSC genomes and downloaded from ftp://ftp.cbcb.umd.edu/pub/data/bowtie_indexes/ ...enome in both .ebwt and fasta formats (e.g. /ccmb/CoreBA/BioinfCore/Common/DATA/BowtieData/H_Sapiens/hg19)> <reads file to be aligned (e.g. s_1_1_sequence.
  5 KB (760 words) - 16:08, 8 November 2011
• Statistical Analysis
  ...or R for the analysis. To get data into R, the easiest way is to make the data in excel then import it into R with this command: * Using R, providing data is formatted in a dataframe named '''dataset''' with columns '''group''' an
  6 KB (1,029 words) - 18:10, 26 June 2012
• Primer Design for qPCR
  # Check if the primer is available in the lab using the Primer Data sheet at https://docs.google.com/spreadsheets/d/1kQ1G52XuoqpAWHIWT5H2UDz4aD # Enter both primers in the Primer Data sheet used in Step 1
  1 KB (249 words) - 17:48, 29 June 2017
• Quantifying Relative Expression from qRT-PCR
  ==Data Processing==
  2 KB (250 words) - 14:57, 2 December 2013
• Lipolysis Assay from Primary Adipocytes
  * Present the data in glycerol (or FFA) released per hour per number of cells.
  2 KB (251 words) - 14:51, 11 November 2014
• Measuring Grip Strength
  * Prepare a data sheet with one row per animal and space for 3-5 measurements per animal. * Record the peak grip on your data sheet
  1 KB (208 words) - 17:20, 14 February 2014
• Pyruvate Tolerance Test
  * Analyse data by both % change from fasting glucose and absolute values. You may also wa
  3 KB (461 words) - 17:50, 6 April 2022

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