915
edits
Changes
Wrote outline of initial page
== Software ==
=== On OSX ===
* Install Filezilla for file transfers https://filezilla-project.org/
=== On Windows ===
* Install Putty for command line access https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html
== Access ==
At Michigan there are two clusters, one for human data (Armis) and one for non-PHI data (Great Lakes). Both of these are connected to a storage service called [https://arc.umich.edu/turbo/ Turbo]. These are available as part of the [https://arc.umich.edu/UMRCP/ UM Research Computing Package].
=== Permissions ===
* For access to https://datadirect.precisionhealth.umich.edu/, you need to complete these two online classes and have the VPN installed on your device. For more details on access follow [https://precisionhealth.umich.edu/tools-resources/data-access-tools/how-to-access-data-tools-analytic-environments/ these instructions].
** [https://maislinc.umich.edu/core/pillarRedirect?relyingParty=LM&url=app%2Fmanagement%2FLMS_ActDetails.aspx%3FActivityId%3D45901%26UserMode%3D0 PEERS - Human Subjects Research Protections]
** [https://maislinc.umich.edu/core/pillarRedirect?relyingParty=LM&url=%2Flearning%2Fcore%2Factivitydetails%2FViewActivityDetails%3FUserMode%3D0%26CallerURL%3D%252flearning%252fapp%252fmanagement%252fLMS_LearnerReports.aspx%253fUserMode%253d0%26ActivityId%3D45843%26SSOBroker%3D1 HIPAA Training for Self Service Tools].
** You also need an '''approved''' IRB noting that you will use the data direct self-service tools.
** To get access to Armis2 fill out [https://arc-ts.umich.edu/login-request/ this form].
You can access the server either through the command line or through a remote desktop if you prefer a GUI. There a limited functionality to Armis2 here that can also be used (see these [https://arc.umich.edu/armis2/user-guide/ instructions]).
If you submit a deidentified data request via https://datadirect.precisionhealth.umich.edu, your data will be sent as a 7zip file to the turbo storage in a folder named for your IRB. You will be prompted to enter a password to protect this file.
=== Accessing the Server - Command Line ===
=== Accessing the Server - Remote Desktop ===
=== Extracting Data ===
== Submitting Scripts to the Server ==
== Transferring Results ==
=== On OSX ===
* Install Filezilla for file transfers https://filezilla-project.org/
=== On Windows ===
* Install Putty for command line access https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html
== Access ==
At Michigan there are two clusters, one for human data (Armis) and one for non-PHI data (Great Lakes). Both of these are connected to a storage service called [https://arc.umich.edu/turbo/ Turbo]. These are available as part of the [https://arc.umich.edu/UMRCP/ UM Research Computing Package].
=== Permissions ===
* For access to https://datadirect.precisionhealth.umich.edu/, you need to complete these two online classes and have the VPN installed on your device. For more details on access follow [https://precisionhealth.umich.edu/tools-resources/data-access-tools/how-to-access-data-tools-analytic-environments/ these instructions].
** [https://maislinc.umich.edu/core/pillarRedirect?relyingParty=LM&url=app%2Fmanagement%2FLMS_ActDetails.aspx%3FActivityId%3D45901%26UserMode%3D0 PEERS - Human Subjects Research Protections]
** [https://maislinc.umich.edu/core/pillarRedirect?relyingParty=LM&url=%2Flearning%2Fcore%2Factivitydetails%2FViewActivityDetails%3FUserMode%3D0%26CallerURL%3D%252flearning%252fapp%252fmanagement%252fLMS_LearnerReports.aspx%253fUserMode%253d0%26ActivityId%3D45843%26SSOBroker%3D1 HIPAA Training for Self Service Tools].
** You also need an '''approved''' IRB noting that you will use the data direct self-service tools.
** To get access to Armis2 fill out [https://arc-ts.umich.edu/login-request/ this form].
You can access the server either through the command line or through a remote desktop if you prefer a GUI. There a limited functionality to Armis2 here that can also be used (see these [https://arc.umich.edu/armis2/user-guide/ instructions]).
If you submit a deidentified data request via https://datadirect.precisionhealth.umich.edu, your data will be sent as a 7zip file to the turbo storage in a folder named for your IRB. You will be prompted to enter a password to protect this file.
=== Accessing the Server - Command Line ===
=== Accessing the Server - Remote Desktop ===
=== Extracting Data ===
== Submitting Scripts to the Server ==
== Transferring Results ==