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==Using NGS Plumbing==
===Installation===
If not already installed install the '''ngs_plumbing''' package, entering your computer password when prompted. You probably need HDF5 and h5py installed as well.
<pre>sudo pip install ngs_plumbing</pre>
===Usage===
Once installed, use the '''xsq-convert''' function from the command line. The following command will convert a filename.xsq file into a colorspaced filename.fastq file
<pre>xsq-convert -s color</pre>
This command will generate a base-spaced file filename.fastq
<pre>xsq-convert -s base</pre>
[[ Category: Bioinformatics ]]
[[ Category: RNAseq ]]
[[ Category: File Conversion]]
===Installation===
If not already installed install the '''ngs_plumbing''' package, entering your computer password when prompted. You probably need HDF5 and h5py installed as well.
<pre>sudo pip install ngs_plumbing</pre>
===Usage===
Once installed, use the '''xsq-convert''' function from the command line. The following command will convert a filename.xsq file into a colorspaced filename.fastq file
<pre>xsq-convert -s color</pre>
This command will generate a base-spaced file filename.fastq
<pre>xsq-convert -s base</pre>
[[ Category: Bioinformatics ]]
[[ Category: RNAseq ]]
[[ Category: File Conversion]]
