Parsing XSQ Files: Difference between revisions
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Once installed, use the '''xsq-convert''' function from the command line. The following command will convert a filename.xsq file into a colorspaced filename.fastq file | Once installed, use the '''xsq-convert''' function from the command line. The following command will convert a filename.xsq file into a colorspaced filename.fastq file | ||
<pre>xsq-convert -s color</pre> | <pre>xsq-convert -s color filename.xsq</pre> | ||
This command will generate a base-spaced file filename.fastq | This command will generate a base-spaced file filename.fastq | ||
<pre>xsq-convert -s base</pre> | <pre>xsq-convert -s base filename.xsq</pre> | ||
[[ Category: Bioinformatics ]] | [[ Category: Bioinformatics ]] | ||
[[ Category: RNAseq ]] | [[ Category: RNAseq ]] | ||
[[ Category: File Conversion]] | [[ Category: File Conversion]] | ||