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Generating and Displaying an Electostatic Surface

2 bytes added, 00:53, 10 October 2009
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===Generate PQR and PX Files for the Structure===
#Download or generate PDB file.
#Go to the PDB2PQR server at http://pdb2pqr-1.wustl.edu/pdb2pqr/. The default settings (AMBER forcefield, internal naming scheme) are ok. Check off the prepare Create an APBS input file button.
#Save the pqr file and the APBS input file.
#Run APBS as '''apbs inputfile.in'''. This will generate a *.dx file.