Difference between revisions of "Generating and Displaying an Electostatic Surface"

From Bridges Lab Protocols
Jump to: navigation, search
(Created page with '==Programs Required== *Pymol *APBS ===Generate PQR File for the Structure=== #Download or generate PDB file. #Go to the PDB2PQR server at http://pdb2pqr-1.wustl.edu/pdb2pqr/. T...')
(No difference)

Revision as of 00:20, 10 October 2009

Programs Required

  • Pymol
  • APBS

Generate PQR File for the Structure

  1. Download or generate PDB file.
  2. Go to the PDB2PQR server at http://pdb2pqr-1.wustl.edu/pdb2pqr/. THe default settings (AMBER forcefield, internal naming scheme)
  3. Save the pqr file.
Retrieved from "http://bridgeslab.sph.umich.edu/protocols/index.php?title=Generating_and_Displaying_an_Electostatic_Surface&oldid=390"