Using Bioconductor To Analyse Beadarray Data: Difference between revisions
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*First define groups for each treatment. If a samplesheet was provided correctly and had this information: | *First define groups for each treatment. If a samplesheet was provided correctly and had this information: | ||
<pre>samples = pData(BSData)$Sample_Group</pre> | <pre>samples = pData(BSData)$Sample_Group</pre> | ||
*Otherwise define these groups manually in the order that they were entered | *Otherwise define these groups manually in the order that they were entered, check by looking at pData(BSData) | ||
<pre>samples = c("Control", "Control", "Treatment1", "Treatment1, "Treatment2"...)</pre> | <pre>samples = c("Control", "Control", "Treatment1", "Treatment1, "Treatment2"...)</pre> | ||
*Next the groups are used to set up a statistical design: | *Next the groups are used to set up a statistical design: | ||