Bridges Lab Protocols

Using Bioconductor To Analyse Beadarray Data: Difference between revisions

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**One option is to use the decideTests function:
**One option is to use the decideTests function:
<pre>results = decideTests(ebFit, method="global")</pre>
<pre>results = decideTests(ebFit, method="global")</pre>
**The relevant options are for method and adjust.method
*The relevant options are for method and adjust.method
***method
**method
****default is "global", which allows for p-value comparasons
***default is "global", which allows for p-value comparasons
***adjust.method, this defines the false-discovery rate adjustment:
**adjust.method, this defines the false-discovery rate adjustment:
****default is "BH" for Benjami and Hochberg
***default is "BH" for Benjami and Hochberg
****other options are "none", "fdr" (same as BH), "holm" and "BY"
***other options are "none", "fdr" (same as BH), "holm" and "BY"
 
==Annotation of Expression Sets and Fitted Data==
==Annotation of Expression Sets and Fitted Data==
Retrieved from "http://bridgeslab.sph.umich.edu/protocols/index.php/Using_Bioconductor_To_Analyse_Beadarray_Data"