Using Bioconductor To Analyse Microarray Data: Difference between revisions
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fit.norm.eb <- eBayes(fit.norm) #Empirical Bayes | fit.norm.eb <- eBayes(fit.norm) #Empirical Bayes | ||
write.csv(fit.norm.eb, file="filename.csv") #write to CSV file | write.csv(fit.norm.eb, file="filename.csv") #write to CSV file | ||
</pre> | |||
==Clustering Analysis== | |||
Bioconductor packages can calculate distance matrices: | |||
<pre> | |||
hc <- hclust(dist(t(exprs(eset.norm)))) | |||
</pre> | </pre> | ||