PCR Analysis of Tail DNA: Difference between revisions

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==Protocol==
==Protocol==
Use the following Volumes per 50ul Reaction:
Use the following Volumes per 25ul Reaction:


#10X GoTaq Buffer: 5uL ("Molecular Biology Stuff" box in freezer)  
Per sample 1X
#Dream Tag Master mix: 12.5uL ("Molecular Biology Stuff" box in freezer)  
#Primer Mix: 5ul
#Primer Mix: 5ul
#dNTPs: 0.5uL of 10 mM ("Molecular Biology Stuff" box in freezer)
#Sterile ddH2O: 7.5ul
#Sterile water: 29ul
#Polymerase Go-Taq: 0.125uL ("Molecular Biology Stuff"  box in freezer)
#Template: 1 uL


Master Mix (Per 5mL -- Make 1mL Aliquots)
*Template: 1 uL
#10X GoTaq Buffer: 625uL ("Molecular Biology Stuff" box in freezer)
#Primer Mix: 625ul
#dNTPs: 62.5uL of 10 mM ("Molecular Biology Stuff" box in freezer)
#Sterile water: 3625ul
#Polymerase Go-Taq: 15.625ul ("Molecular Biology Stuff"  box in freezer)
*Add Template Individually


Run PCR Program (approx 2 hours).
Use Cycler 1 on 6th Floor
*Login: Sergey, Just press enter to Login
*Under Genotype folder, pick Ingles program for Ingles genotyping
*Under Genotype folder, pick regpcr program for PLT genotyping


Make sure to press enter 2x once to confirm Tubes and second time to start PCR
Run "specfic" PCR Program for gene of interest (approx 2 hours).
* specific to each gene
 


see [[Preparing an Agarose Gel]] for details on preparing a DNA gel
see [[Preparing an Agarose Gel]] for details on preparing a DNA gel