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Using Bioconductor To Analyse Beadarray Data

644 bytes added, 18:04, 21 August 2009
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anno = cbind(GeneSymbol = as.character(symbol), GeneName = as.character(GeneName))
</pre>
*To add this annotation to the data analysis file:
<pre>
ebFit$genes = anno
write.fit = (ebFit, file = "Filename.csv", adjust="BH")
</pre>
*This example includes a false discovery rate ("BH") adjusted p.value.
*This function writes a tab-delimited text file containing for each gene (1) the average log-intensity, (2) the log-ratios, (3) moderated t-statistics, (4) t-statistic P-values, (5) F-statistic if available, (6) F-statistic P-values if available, (7) classification if available.
*To add this annotation data to the expression set:
<pre>
data = exprs(BSData.quantile)
data = cbind(anno,data)
write.csv = (data, file = "Filename.csv")