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Using Bioconductor To Analyse Beadarray Data

5 bytes removed, 17:52, 21 August 2009
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→‎Generating a Venn Diagram for Differential Expression
**One option is to use the decideTests function:
<pre>results = decideTests(ebFit, method="global")</pre>
**The relevant options are for method and adjust.method***method****default is "global", which allows for p-value comparasons***adjust.method, this defines the false-discovery rate adjustment:****default is "BH" for Benjami and Hochberg****other options are "none", "fdr" (same as BH), "holm" and "BY" 
==Annotation of Expression Sets and Fitted Data==