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ebFit = eBayes(fit.cont)
</pre>
===Generating a Venn Diagram for Differential Expression===
*First define a cutoff criteria for inclusion.
**One option is to use the decideTests function:
</pre>results = decideTests(ebFit, method="global")</pre>
**The relevant options are for method and adjust.method
***method
****default is "global", which allows for p-value comparasons
***adjust.method, this defines the false-discovery rate adjustment:
****default is "BH" for Benjami and Hochberg
****other options are "none", "fdr" (same as BH), "holm" and "BY"
==Annotation of Expression Sets and Fitted Data==